PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g17650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARF
Protein Properties Length: 902aa    MW: 99691.2 Da    PI: 5.7438
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g17650genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772e-24156257199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+         +++++  +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   ++++ +l+
  Tp1g17650 156 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLM 251
                99*********************999****996444444..8************************************************..4577778* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+v+r+
  Tp1g17650 252 VGVRRA 257
                ****97 PP

2Auxin_resp111.67.9e-37282365183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha++++++F ++YnPra+++eFv++++k++ka+  +++svGmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+
   Tp1g17650 282 AAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 365
                 79********************************9989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-45146285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-41149270IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-23155256No hitNo description
PfamPF023624.6E-22156257IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155156258IPR003340B3 DNA binding domain
SMARTSM010191.1E-25156258IPR003340B3 DNA binding domain
PfamPF065078.9E-32282365IPR010525Auxin response factor
PfamPF023095.1E-9790879IPR033389AUX/IAA domain
PROSITE profilePS5174523.064793877IPR000270PB1 domain
SuperFamilySSF542774.61E-7807872No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MMASLACVED KMKTNGLVNG GTTTTTSQST LLEEMKLLKD QSGTRKPVIN SELWHACAGP  60
LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD  120
EIYAQMSLQP VHSERDVFPV PDFGLLRGSK HPAEFFCKTL TASDTSTHGG FSVPRRAAEK  180
LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV  240
LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFYNPRA  300
CPAEFVIPLA KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK  360
WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGETEWGSLI  420
KRPLIRVSDS TNGILPYASF PNMASEQLMK MMMRPHNNQN ATSFMSEMQQ NVLMGHGGLL  480
GDMKMQQQQP MVTNQKSEMV LPENKLTVNP SSSNTSGQEQ NLSQSMNAPA KSEKPTLSGC  540
SSGRANIANE QQSMERSSQV GTGNVCNEEK VNEVIQKPGT LSPLQADPCP DVSQQIYPPH  600
SDPINGFSFL ETEELTSQVS SFQSLAGSCK QPLMLSSQDS SAVVLPDSTN SSLFHDVWDN  660
QLNGLKFDQF SPLMQQDLYA CQNICMSNST NSNILDPPLS NTVLDDFCAI KETDFQNHPS  720
DCLVGNNNNS FTQDVQSQIT SASFADSQAF SRQDFPDNSG GTGTSSSNVD FDDSSLLQNS  780
KGSWQKIATP RVRTYTKVQK TGSVGRSIDV TSFRDYEELK SAIECMFGLE GLLTRPQSSG  840
WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS  900
VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013901392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532570.0AK353257.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-33-P01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416458.10.0hypothetical protein EUTSA_v10006748mg
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLE4MXL00.0E4MXL0_EUTHA; Auxin response factor
TrEMBLV4MSL00.0V4MSL0_EUTSA; Auxin response factor
STRINGfgenesh2_kg.1__2164__AT1G19850.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58082746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein